Basic Information | |
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Taxon OID | 3300019487 Open in IMG/M |
Scaffold ID | Ga0187893_10034758 Open in IMG/M |
Source Dataset Name | White microbial mat communities from a basaltic lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - MA170107-4 metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 5582 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (71.43%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Cave → Unclassified → Unclassified → Microbial Mat On Rocks → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli) |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: the Island of Hawaii | |||||||
Coordinates | Lat. (o) | 19.0643 | Long. (o) | -155.8008 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F002849 | Metagenome | 526 | Y |
F003004 | Metagenome | 514 | Y |
F018586 | Metagenome | 234 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0187893_100347583 | F018586 | N/A | VNPRKPALVDAWAALGYARLLVEITLRAVNVLIALVTLASAVAVLVSDVLVAGYRAHHRDALWFVAAYAAVQVVMVVEFARGGRLVPWLALAKAAAAYFLLANFLSLWPEWRWWTPARYVYQLFDWGKDTRLGLFTLVFLGRGTFNTLNAMYFTRHWWGPLRVHSPLLGRALTAVPIGVAALCVWAFLTLVREEATLYSADAREVAELVVQDLECDAIRAKVGTTTEDLRQRGARRYHVQIAYGCPLTRVTVRTEDGRSGAALLPRPDCCPPGS |
Ga0187893_100347586 | F003004 | GGAGG | MLGLFKRPPKLEAAFRPTLAVARELAREVEVTGELTLRNLGRDAELSALELVLIAGGTRRIDLDLPQAWRDGVRIPAGGAISETVSWKVKLAAPMRAPAAEIQVITTAGGRHTPLATTAAFPLGNE |
Ga0187893_100347587 | F002849 | AGG | MRWRVVLTALLLTTVAAAADEAAVKVVEHKGRWESGYGAEFYNVVGRVKNASDHTVKYVKLRVEALAADGKVVASTETYNESAEALTIPGAKSETVKVAPLAAGAEERFRASFLKEETPAFETYRVVVVESPRATP |
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