NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187893_10024120

Scaffold Ga0187893_10024120


Overview

Basic Information
Taxon OID3300019487 Open in IMG/M
Scaffold IDGa0187893_10024120 Open in IMG/M
Source Dataset NameWhite microbial mat communities from a basaltic lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - MA170107-4 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7320
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (92.86%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Cave → Unclassified → Unclassified → Microbial Mat On Rocks → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location NameUSA: the Island of Hawaii
CoordinatesLat. (o)19.0643Long. (o)-155.8008Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004743Metagenome / Metatranscriptome425Y
F025257Metagenome / Metatranscriptome202Y

Sequences

Protein IDFamilyRBSSequence
Ga0187893_1002412010F004743GGAGGMAAPSFADQVASLNATLNAIEERLAQGQAPVEGLEDFKSALDDVRLRLWGLLSAAGGDDYKGFQERFRIRRATEMTRGLGGDLRAGAISARHRELAGLKEAASELSQSIEQLHRQAF
Ga0187893_100241207F025257AGAAGGMSEITIEYRGKQITASLGRGETTAGPATPAGDQALWYVTIGGTALTKFPATPGDSEETVRTRVLQWLGEHPDMLDRDQIILGGG

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