Basic Information | |
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Taxon OID | 3300019487 Open in IMG/M |
Scaffold ID | Ga0187893_10000509 Open in IMG/M |
Source Dataset Name | White microbial mat communities from a basaltic lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - MA170107-4 metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 101175 |
Total Scaffold Genes | 92 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 76 (82.61%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Cave → Unclassified → Unclassified → Microbial Mat On Rocks → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli) |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: the Island of Hawaii | |||||||
Coordinates | Lat. (o) | 19.0643 | Long. (o) | -155.8008 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F012957 | Metagenome | 275 | Y |
F013621 | Metagenome | 269 | N |
F032948 | Metagenome / Metatranscriptome | 178 | N |
Protein ID | Family | RBS | Sequence |
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Ga0187893_1000050976 | F012957 | GAGG | MDKTFLQTLNFYRGKSALQISPSPELALVFVSLAPAIPGMENKMPDKNSKKYQWEKKLTASFNFEGALEVAAAAAALAQGREELVSGPDGNLPSWYRDPAKTGRDGAAKTIGFYRPKDQPKTPKVRYFLGITENSKDKQGIKIGISLEYPDLFKIARVMEEAALAILGWRKDIEKRREGNGRSASEKAEAAEAF |
Ga0187893_1000050977 | F013621 | AGGAGG | MITQEEAKDFIRRYREVVFDTPAGEVHVCGSKDVYEELIGQGKVAFSPNELIHLQKAAENGSLETIVKIKSSIPGAKIKEIIPVEKKQEAAPKQN |
Ga0187893_1000050991 | F032948 | AGGAG | MAQLEQKCPGRYVMKDLYLFSCKRDILARNLETLPINTPLKPIRPETALRRALSLNLDQKRYTFEESSFEKVNDKPVQIILSREALASGDIDASVGKAYVERGRIEVNTTYPEIRNSLESGFRFHMETAITRDLSIVVTKYLIACMGIPVRPKNGEIYFALEKYIPEVLELMTVIDSLGQESTIRVSPVVGDEVQKVVERAHDHFRTSVETLMRLIEEISDETHTKTLNTRLKDARDLLDQAAAYEIGLGMELEEVKGKIQEAKSRIAERLLGRPAASHHREETAAPAAHMAGSNGQLDL |
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