Scaffold Ga0187893_10000148

Overview

Basic Information

• Taxon OID: 3300019487
• Scaffold ID: Ga0187893_10000148
• Source Dataset Name: White microbial mat communities from a basaltic lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - MA170107-4 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 162398
• Total Scaffold Genes: 151
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 116 (76.82%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Cave → Unclassified → Unclassified → Microbial Mat On Rocks → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location

• Location Name: USA: the Island of Hawaii
• Coordinates
  • Lat. (^o): 19.0643
  • Long. (^o): -155.8008

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013593	Metagenome / Metatranscriptome	270	Y
F022510	Metagenome / Metatranscriptome	214	Y
F030603	Metagenome	185	Y
F043144	Metagenome / Metatranscriptome	157	Y
F069903	Metagenome	123	Y
F085792	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187893_1000014817	F043144	AGGAGG	MKIVSRIKLTADRLTLAWLSIAIRYPRVYLVATTLIGIVSLILLFAPDASAQLETQVTDALNPLARLLVGPIAKGLAIIGLFAFVGLLYAGRWMMAVSSLVAAVILGLLANIVTAIFQGSNAASFTLGG
Ga0187893_100001483	F085792	N/A	MFGETSLEAIDGEKKTGGRLGLIIIILALAHAVLYLAPNLHLPFDLDELFLLGYALVLADSSLVVFLGIKFCTLLGNR
Ga0187893_100001484	F069903	AGG	MARKRITLSLDIGAPGDKAIFDFLTGLPKRTRSEIIKEILLDALEKKDENPKPDSPLTTKSGDAAGFDPDEIIEKLF
Ga0187893_1000014867	F013593	AGG	MSDINYSLETLTGKHGGLLEVVETIVSDGRVIMILTDEDVLQRRDAPLKGSFYRVVLPLARASIQLKGEAFELVRESLKFPEDGKGLENLMRELGR
Ga0187893_100001487	F022510	N/A	MALPPSILRQLWEAGYGGKVIRVPAKNQRLELKVIANEILKEAERLYESKGSTFVLERRGRSDFYRSFGALKLCRRFHLSIEEARKVRRRAYSRWSHWMRECEANMLRASDRSGESGEGRRAYLEVRKRIREGEEVAGVAAEILELAWASIRSVKWK
Ga0187893_1000014871	F030603	GGA	MKKNWYCKSVHVPPHVLTSLALSQYHFSTPEIRVLMRHILGYALSGRTIKRLAKSAGRRLKRGRPKTTPRVQKKQLNDLIETTSAGFDVFNGNVLHFLNHIELEFGLSPRQYLKWVTQYVRRGKCMMRRCLLCGGFFPSLDSGERHCRECQGDRRRLLNEERRSSFDFQ