Scaffold Ga0181562_10152699

Overview

Basic Information

• Taxon OID: 3300019459
• Scaffold ID: Ga0181562_10152699
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011511BT metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1254
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001205	Metagenome / Metatranscriptome	748	Y
F029152	Metagenome / Metatranscriptome	189	Y
F034593	Metagenome / Metatranscriptome	174	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181562_101526991	F034593	GAG	MDRYRVIERFAKQHNWTQGLELGVWVGVTTFWLMKNTSVAMTCVDAWEVQEDNPEYDWQYNKKPVFKGGKLVRLEEFKHEGQVWNHGANEQRFRQEAEQWGDRIK
Ga0181562_101526992	F001205	N/A	MFNNVIGEWPTHVRFILTSCDDKYFDQYFPRFYQTYTQHWQLPIHVHVIDPSEQSKERLEKLDLSYTECHTDSKVLKWPYSYVTYCQAQRFILLGFNLLDHQSVIVADVDSYALREPNTTQKHTLESNMAFTEYNGRLMATFCNFHHSRRALAKTSAIKMKELIEQTDTIGVDQLVIKDVFKPLGYNNLKHGVWIRHRDVKTDEDLQKHNQCLIYHEKGTRGKIKAVETTWTDIGL
Ga0181562_101526993	F029152	N/A	TDSTDFDAVADKARRDSRINTSGYDRLTVEAQITKSCEQLGITTSNRTINNQSVSLLNNMNKHDRDQIKSRLDLNESTNTYS