Basic Information | |
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Taxon OID | 3300019458 Open in IMG/M |
Scaffold ID | Ga0187892_10024187 Open in IMG/M |
Source Dataset Name | Bio-ooze microbial communities from a basaltic lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - MA170107-3 metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 5456 |
Total Scaffold Genes | 10 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (40.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Cave → Unclassified → Unclassified → Bio-Ooze → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli) |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: the Island of Hawaii | |||||||
Coordinates | Lat. (o) | 19.0643 | Long. (o) | -155.8008 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F007548 | Metagenome | 349 | Y |
F021936 | Metagenome / Metatranscriptome | 216 | Y |
F094350 | Metagenome | 106 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0187892_100241873 | F007548 | GGA | MEPAAPARITAASKINDVLARHPGTAPVFTQGRRLYVDQRHELYARFPGLTVGDFARQNDMDPAPLLAQLNALAESEDAARQPATRAQSADEARPGQFSLTLGYTASHRPREDSTPDSVSVVAVQSSRGPE |
Ga0187892_100241876 | F021936 | GGAGG | MPRLAKTVSTRGIARPAGFLAVLLLLMGAGSVAAQGFSRPADADLRLEWAGAEDRRGRPLVSGYVYNQRAGAYAASVQLLVEALDASGQVVGSTRGFVLGDVPPSSRTYFETRAPAKAASYRVTIQSVSFRAYGAGGGM |
Ga0187892_100241877 | F094350 | N/A | MARPAHPRSVLEGLALAVIVVVAFLVGMLVERLHSHAERDQMLRRYDQALKEHRSLLMEAEKRQEGGTPKR |
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