NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187892_10022135

Scaffold Ga0187892_10022135


Overview

Basic Information
Taxon OID3300019458 Open in IMG/M
Scaffold IDGa0187892_10022135 Open in IMG/M
Source Dataset NameBio-ooze microbial communities from a basaltic lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - MA170107-3 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5928
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Cave → Unclassified → Unclassified → Bio-Ooze → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location NameUSA: the Island of Hawaii
CoordinatesLat. (o)19.0643Long. (o)-155.8008Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035236Metagenome172Y
F045207Metagenome / Metatranscriptome153Y
F059117Metagenome134Y
F066913Metagenome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0187892_100221352F035236N/AMNLLLGLPFIAVVWGLLLPLLFLDGAVAYLTFLWENPRLVAAVVVNLGVVSYWLARRLSQALLLRSTGAKLRATHEPP
Ga0187892_100221354F059117GGAGMSASDSRFVAIWASHEARARVWFRLFLFTAAALVLSLFTTLRVWSRPREVVRIGCDGIPQVVTLDNAAYSEPNEREIRAFATEFSVFYARSDSYSILNDLVWCANRMAPELRDRFKRSVRGTPEARGIITVIEKLQRRTQIDPATLEIQVDKRPYPWKVKVKGVRQVVGDSGPGETFELDLELVRASREEHLEGLLVWAIRAKGEPIDTVLAAIGTQGGRIP
Ga0187892_100221357F045207GAGGMRTRLAVIIALALLSAGCTADVLGRMKGFDVKQIIQSAPVVEAVLKAKNIGRVLAGIEALILAFVSWYRIHAGGHWLSITKDWFFGILVCAFILTSAGTSAGFEQWIWRVGVYLGEQFNPTDGFLMENFNKAVGSHSGLFLLIQNVAPTLTTDDQRAVEAVTWIFSSPYVSGIVGLNAIGIYIMKMVMQVSYAWLISFYWMLTPLVAPMVILPQTRSVFLGWLKTYVSVALWPMFFAFAERLALAIPWSAWIGAADGAGDGWAVITSILQGEIMLLIFNVTFFFVYLSIPIASYLIVSGASRPFRML
Ga0187892_100221359F066913N/AGLVVAVLLLGSSGASADPSNWAQLGQIILWLQRIDQTLRDINDIVDTVKEKLLIVYPNGALRQIETFFEPVDSIKREVEKLACSWKFTPRVNRLRLALFGGGSFCRSDWNVVFGPPVATVDWDLESYYDWSAVRRLNLIKTRNEKSALRADEAHWLATEALKGRADLDPTKPYSPGYSQRLSALGAAELGNVMVEMGDTQTAMLELDQEALNDKRRRRLLDHSAATLVYAGLTTLQGSAPDPGLLLFGDRP

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