NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187892_10002934

Scaffold Ga0187892_10002934


Overview

Basic Information
Taxon OID3300019458 Open in IMG/M
Scaffold IDGa0187892_10002934 Open in IMG/M
Source Dataset NameBio-ooze microbial communities from a basaltic lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - MA170107-3 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)32455
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (78.12%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Cave → Unclassified → Unclassified → Bio-Ooze → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location NameUSA: the Island of Hawaii
CoordinatesLat. (o)19.0643Long. (o)-155.8008Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009097Metagenome / Metatranscriptome323Y
F013243Metagenome / Metatranscriptome273Y
F016778Metagenome / Metatranscriptome244Y

Sequences

Protein IDFamilyRBSSequence
Ga0187892_1000293411F016778GAGVALSLSGLAGCASDAEFPPAQPGAAAVHFKVTQPGQFPIDVYLSTWGEGYVIYAPGQAPIHLLSDKKGGYIVQQPGTTAAFVVRMQDGSGWSIRRGNAPATFLLKEKEGRGWILQAPGELPTLIQPD
Ga0187892_1000293419F009097GAGMRKWIGALSLVWLLWSDLSVITRDNPLDTVVLRWLARVPQLETDRVLAGRYDTAEECKAALERHIGTLKVINDSWSADAFQRDGDSGTVHYYPGGIVYARAALRCAQQ
Ga0187892_1000293427F013243N/AMSVERLAARWPDLRTALLVPILVAAIASAVTAGERRAGTVLAVDAQARTLTVDELGANAERRALRVLVPREAAVVLSQRNQSSRELKDTFRNSSISLGDVRVGDFVVVELSDDPAIARLVMVTLRRDAGS

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