Scaffold Ga0190264_10671976

Overview

Basic Information

• Taxon OID: 3300019377
• Scaffold ID: Ga0190264_10671976
• Source Dataset Name: Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 758
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States

Source Dataset Sampling Location

• Location Name: USA: Utah
• Coordinates
  • Lat. (^o): 38.0262
  • Long. (^o): -109.5407

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022153	Metagenome	215	Y
F051755	Metagenome / Metatranscriptome	143	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0190264_106719761	F051755	N/A	GGALAGYLPKEWNGKRVAVRFTRGRGFDARLVGNSAGGITVEPIEEDAEEEHARSAFVPWAAVRYVQLLDEPSEASD
Ga0190264_106719762	F022153	AGGA	VADPVGFTTAFGKLEQAIRELVGAGDIKERLEIATTTLVLIFPDDFPAGHLRDEYADIRQALAWPPPEEGSRQGLLESTLQAMTEEEAGELAKSIFSLYTSAAEAVYGGSH