Scaffold Ga0190264_10254106

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0190264_10254106

Scaffold Ga0190264_10254106

Overview

Basic Information
Taxon OID	3300019377 Open in IMG/M
Scaffold ID	Ga0190264_10254106 Open in IMG/M
Source Dataset Name	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1023
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States

Source Dataset Sampling Location
Location Name	USA: Utah
Coordinates	Lat. (^o)	38.0262	Long. (^o)	-109.5407	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F043250	Metagenome	156	Y
F064450	Metagenome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0190264_102541061	F064450	N/A	AEIQKSMSSVTLFYWGTKEEVGTRWHEKQLELTDEEADSIGV
Ga0190264_102541063	F043250	GGAGG	VGPKTMQLLKAMRGQLGDTSASRSVDAVAAAEALGMDTTTHDFDRRLQDLVGAGYLEPDPHSVAPAAQGLYRITFAGLDAADGY

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