NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0173479_10555271

Scaffold Ga0173479_10555271


Overview

Basic Information
Taxon OID3300019362 Open in IMG/M
Scaffold IDGa0173479_10555271 Open in IMG/M
Source Dataset NameSoil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)591
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.3Long. (o)-89.38Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018064Metagenome237Y
F070514Metagenome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0173479_105552711F070514AGGMNCPACYSEIDDRSYRCAQCHRVASYRRLCWRYRYFVLVLVALVGYWTIPGLIRRWFAMDYNKLP
Ga0173479_105552712F018064N/ADKNPMVGLAWKDINDAVQVKFKDVPEPARRKQMEDLTKQTYYVYIFLSLYARMDGLRSRGILSPNDDMIVTWKRSWLPNLMRSELGHWMLDNHLMEYYSEAMIKDLRDAAVPAPANATAQASSQIGPH

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