Scaffold Ga0173482_10113974

Overview

Basic Information

• Taxon OID: 3300019361
• Scaffold ID: Ga0173482_10113974
• Source Dataset Name: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1001
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.3
  • Long. (^o): -89.38
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018937	Metagenome	232	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0173482_101139742	F018937	AGG	VQVPGVVTSEKVNTTVKSQASVAVGATKEGRAGQAIGVTCVAHVMVGGVISCTTIVELHIAEFKQSSVAVHVLVTL
Ga0173482_101139743	F018937	AGG	VPGVETSEKVIATVRSHASVAVGGVNTGVAGQAIGDVCVTHVMVGGVISCTTMVELQVAVFRQSSVAVHVLVTL
Ga0173482_101139744	F018937	GAG	MATVRSHASVAVGATNAGNAGQAIGVTCVAHVIVGGVISCTTIVPLQVAVLPQSSVAVHVLVVL