Scaffold Ga0187894

Basic Information
Taxon OID	3300019360 Open in IMG/M
Scaffold ID	Ga0187894_10000662 Open in IMG/M
Source Dataset Name	White microbial mat communities from a lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - GBC170108-1 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300019360 Open in IMG/M

Scaffold ID

Source Dataset Name

White microbial mat communities from a lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - GBC170108-1 metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	46206
Total Scaffold Genes	66 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	55 (83.33%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

46206

Total Scaffold Genes

66 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

55 (83.33%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Cave → Unclassified → Unclassified → Microbial Mat On Rocks → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Ecosystem

Environmental → Terrestrial → Cave → Unclassified → Unclassified → Microbial Mat On Rocks → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location Name	USA: Hawaii
Coordinates	Lat. (^o)	19.2894	Long. (^o)	-155.8119	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Hawaii

Coordinates

Lat. (^o)

19.2894

Long. (^o)

-155.8119

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016408	Metagenome / Metatranscriptome	247	Y
F019245	Metagenome	231	Y
F023611	Metagenome / Metatranscriptome	209	Y
F042960	Metagenome / Metatranscriptome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187894_1000066216	F042960	AGGAG	MPIVSFSDRDLLRGTVVTPGWYRVVINTVGEAPAKASEKGPSTNFPVEATIKFHGDDGTTQFTGVPLDWNFNSKAIGFAVGYLQAFGVEVKAGTRFDLKSSEGRELDVFVENDTYQNRLVNRVNHKYRAPKLDVQAA
Ga0187894_1000066238	F023611	AGGAG	MARIPIRLAGPAQVSNAAATKYTVPALTKTVIRHIHIQNPSGAAVTFTASIGADAAGTRIFDAYSIAAGTVFDHFCYYVLSTTEIFQAFAGTNNILTLVIDGDEIVLG
Ga0187894_1000066251	F016408	GGA	MAVSETQVAALELERVRQKIEVLFERDDKFYSSIKKRNVEKISNRQMRVPLELRPGGSFQYFSPDGGDLGRGGGPTFDKAVLTSVFLSENIEYTKLTQWSTDDERKAITNGVRRLTASAFDEMRRQLDAQAMQDGTGVIGVISAVSTASGVDTYTLGTDGFGARLMRFGQTVQVFDTTLGTPRGQGVITKWDVENKSIDVTPAITGAVATDKLVTAGLTNPASMPALYGVPYHHSNASAGTWLGFSRSATPEIRSNRVNAASSALALPFARLSMNKIGNRVGLDNDFKPVAWLHPCQQQAYEEIGQLVISIFKEAKDEALDLYFGDNMQMAGAKLRKSFNWDKTRIDFIVDEVWGRGEMLPIGFYTTDGRKIFEIRGPSGGVATAEIFYMVNGFQFYVSNPAATAFIDTLSVPTGY
Ga0187894_1000066265	F019245	GAGG	MKNLVGKFTFTIPDGHAQAGDKLEKGFEYRQCENADEAQVVLAEKKWDVTIMVNDTLKANARSNAYQAALLPYRPSEVSAEEIQERMVRDFIRLGIPEEAARAQVSSILATKTETE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0187894_10000662

Overview

Ecosystem & Geography

Associated Families

Sequences