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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300019356 Open in IMG/M |
| Scaffold ID | Ga0173481_10008658 Open in IMG/M |
| Source Dataset Name | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2815 |
| Total Scaffold Genes | 6 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts) |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.3 | Long. (o) | -89.38 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F007042 | Metagenome / Metatranscriptome | 359 | Y |
| F021560 | Metagenome / Metatranscriptome | 218 | Y |
| F030490 | Metagenome / Metatranscriptome | 185 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0173481_100086581 | F007042 | N/A | ETPPGLEGAKMLMLINRETGKGLGVTLFESEEAMRRGDEALNAMNPGGTERRTSVEFYEVPVQTVS |
| Ga0173481_100086582 | F030490 | AGG | VLQGHLERLGVSSFWLRSALDAIRYCEQGDFFQPVFSVAGPAPARSVVALMRLEPFVRAEIDWTISPSESPFWVGSVGELQDELFDATASRFLNLYWSEDNPSVRPDLEAAFRDMVSFAENELPAATPAQNEDARHLLSALGSGGYVWRVAESTARTTDLNLRADLVKEVEAVVASFPESEPEERLLAWAATECVNRNLLFGSASPGGWAAGGEFLRRGFRFAEGHVFSEDVALPPKDQWYAFSFGVALYDVDAFLATRPPRAAGRAGRRGRLSQQAAR |
| Ga0173481_100086583 | F021560 | AGGA | LKGVLFVLIAVALAGLTACSGGSGEATSTGPLALDQRVVTEEDAPDSKADPVEKRQIAPDEQAFSDTMGDAFINPTDEEKARLGTIGFVKAIRDTRYFGDVHSQDDLHTFSLVVQLDSPDGAKEMADFFHTDGVRPCPESCAFSVTEFDVDGIPGATGVRRYASEEAVKTAGTTENRPYDSYDIQFADGDFAYRIELGGPPGKPTEDEAVEIAQNLYDRVHGRPTAS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |