Scaffold Ga0187840_10001573

Overview

Basic Information

• Taxon OID: 3300019289
• Scaffold ID: Ga0187840_10001573
• Source Dataset Name: Extremophilic microbial mat communities from Yellowstone National Park, Wyoming, USA - OCT_B_HostDNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3099
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Microbial Mat → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.534
  • Long. (^o): -110.7978

Associated Families

Family	Category	Number of Sequences	3D Structure?
F080678	Metagenome	115	N
F088087	Metagenome	109	N
F100012	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0187840_100015732	F100012	GGAGG	MDREQVRQALEVVQAEFGITDLDHFIRSAWEDGDIVNAEGVAELVERATEIVLNQHFLWVHIVEFEDTELRIPNGWYSFVAVHPETGQCLTFINDQVYRWKCAGFRARIRSADDAIDAVTRLTELIEQNLMSRAVK
Ga0187840_100015735	F080678	GGAGG	MFVRKVDAKTTPIAEVYDDWERIWMGEKEIRRFLAYTGLSAPPYNLRVEHFLQFPFLRGISAGKFMKKLHRLGVTWSFNRSVMRRGVLQAVGYKLLDIEAYEHARTFGRREEVDAHAGI
Ga0187840_100015736	F088087	GAGG	MLKAGDSSVWTPVTVSSAPCEICRRKSRSVVYECTEGKWAGVRVVACPEHAERAIEQFIAGGEERCS