Scaffold Ga0182058_1686160

Overview

Basic Information

• Taxon OID: 3300019283
• Scaffold ID: Ga0182058_1686160
• Source Dataset Name: Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 101404CT (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1200
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009303	Metagenome / Metatranscriptome	320	Y
F028656	Metagenome / Metatranscriptome	191	N
F037991	Metagenome / Metatranscriptome	167	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0182058_16861601	F037991	N/A	TKGANMKINQIIAEIHGMNRDDLNKVVEAVKYARSQEHRQMANKLKSGDIVEFDGKYGKTVKGTVIKTAIKYVSVDCGIDGRWRVPAGHLRLAA
Ga0182058_16861602	F009303	N/A	MESTCRPLEVGGIMLNVLKWVATATLIIGFGFFSAGFGFGWFLQIGGGVLWLIAAVLMKDKPLIVTNGLMTTAGILGRLLG
Ga0182058_16861603	F028656	AGGAG	MTNKVELDFFFNREDDWGANYNNQDFFQYNIERLRWCLVEADHLEGNPFTGCIDLDTLEVKDLKAFDLLYSLDHDELLEMVEDKEWDWIGDDFEHMEAYLSFIMQHDKAFCYSVKGEGYKSDSDYLHIETWSIPEKFLKSDALRDAYIAGSSNQSGDYYMDSDNHGY