Scaffold Ga0182075_1028284

Overview

Basic Information

• Taxon OID: 3300019282
• Scaffold ID: Ga0182075_1028284
• Source Dataset Name: Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 071407BT (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1358
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009303	Metagenome / Metatranscriptome	320	Y
F028656	Metagenome / Metatranscriptome	191	N
F037991	Metagenome / Metatranscriptome	167	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0182075_10282841	F037991	AGGAG	MKINQIIAEIHGMNRDDLNKVVEAVKYARSQAHREMANTLKSGDTVFFDGKYGKTVKGTVIKTAIKYVQVDCGIDGKWRVPAAHLRLAA
Ga0182075_10282842	F009303	N/A	VESTGRTLEVGGVMLNVLKWVATATLIVGFGLMSAGNTDGWYLQITGGFLWLIAGVMMKDKPIIATNALMNTVGILGRLLG
Ga0182075_10282843	F028656	AGGAG	MTHKVELDFFFDREDDWGANYNNQDFFQYNIERLRWCLVEADHLEGNPFTGCIDLNTLEVKDLKAFDLLYSLGHDELLEMVEDKEWDWIGDDFEHMEAYLSFIMQHDRSFCYSVKGEGYKSDSDYLHIETWSIPEKFLKSDALRDAYIAGSCNQSGDYHMDSDNHGY