Scaffold Ga0182073_1096206

Overview

Basic Information

• Taxon OID: 3300019274
• Scaffold ID: Ga0182073_1096206
• Source Dataset Name: Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 071405CT (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1562
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012734	Metagenome / Metatranscriptome	278	Y
F022603	Metagenome / Metatranscriptome	213	Y
F068249	Metagenome / Metatranscriptome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0182073_10962061	F022603	AGGAG	MLLNVNVLQLQGTGDDEYAWEIAAVCADYRDAVDKLAEINADYKDVDSAFFKLNENARIETHDVVDNYWGL
Ga0182073_10962062	F068249	GAGG	MRYTGTNKTLLAFEASNYDYNVKHNCGGDETKCYNLTNEQKETLFKVVDKYKFIAGNYEATMIQGVGHAYCDSGIMSDAWADEDVEILSKYLRDTVEGTDNNIFFDTDIVYKCGDDIIDTHTDGARTHMWHNLFIAEMETALNIDDTETWAEYAWDLESYMYENK
Ga0182073_10962063	F012734	AGGAG	MKKQIAYGYWWNCASCGTENAYGLTADEAEEYIRDWEEDNADAVAEGETGEGACDWWYNVTAEENDAHIEDKEKCWKCNAVATKETRTDKAKWFDSIVDNLEKSS