Scaffold Ga0182073_1027199

Overview

Basic Information

• Taxon OID: 3300019274
• Scaffold ID: Ga0182073_1027199
• Source Dataset Name: Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 071405CT (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1559
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022417	Metagenome / Metatranscriptome	214	N
F028777	Metagenome / Metatranscriptome	190	Y
F050395	Metagenome / Metatranscriptome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182073_10271993	F050395	GGAG	MYPEVRQNKHTWSYRFLYWNTDKPEINLYTIDTDKGFQVAESAAWGNATFDGCRNMKYIGKNKMEVDNGTDA
Ga0182073_10271994	F022417	GGAGG	MAQMPKFLEDYTTVDELISKMNKEYPECRLVSELIGYGDDWAIFKSSFFENKDDVEPKATAYAKQTSKDHNSWFEMANTKANGRCLRIVFSESTLAEEMIGIAPSKTEVKEAPQKTSLEKKVEHLEAEGLVEDISNKKNALMLNLKDYSLGVTGNDLDKARAITAEALSTMGISKTEVSINNLQSIKNKISDLATQEKVYADKGE
Ga0182073_10271995	F028777	AGGGGG	MLGLFGRNKPLTTMETLQLEKDLSLAKKIHYILELEGKICSLDPEFNKNGNLRKVVHRLKTEHNAVIYKEECNCELKQKAKLNQNGTPRKHLA