Scaffold Ga0184644_1189279

Overview

Basic Information

• Taxon OID: 3300019269
• Scaffold ID: Ga0184644_1189279
• Source Dataset Name: Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3073
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9195
  • Long. (^o): -106.9496

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013869	Metagenome / Metatranscriptome	267	Y
F021438	Metagenome / Metatranscriptome	219	Y
F105847	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0184644_11892791	F021438	N/A	MKPIKTPTQLRLTQDLLERADALIEVMAADPEVRALGMPTRTAVLRLAIARGLRDLECQYQRPTPTYTPAPRSAPPPHDATLRSHEGTLSHVYAGNDREDQEPGAPRNGSGVSAPAPKGL
Ga0184644_11892795	F105847	AGGGGG	MATYVTIRGETLARMPGIDPADIPGLLQMLVSTACGPEQRDIVRVTHAPTGFEMLWVEEIADLRGTIAAQEQDGLTRGLTEPAAEVIVSLQQAFMHGEIPGPLW
Ga0184644_11892797	F013869	AGGA	MTIAKVLAVYKTSPLVLIVESAEGTVCELSLMDLHGRNHRFSDDAWTSLVEEYRMFTCQPAPG