Basic Information | |
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Taxon OID | 3300019265 Open in IMG/M |
Scaffold ID | Ga0187792_1234694 Open in IMG/M |
Source Dataset Name | Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP10_20_MT (Metagenome Metatranscriptome) |
Source Dataset Category | Metatranscriptome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 563 |
Total Scaffold Genes | 1 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 1 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | Colombia: Department of Meta | |||||||
Coordinates | Lat. (o) | 3.8381 | Long. (o) | -73.3194 | Alt. (m) | Depth (m) | 0 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F020300 | Metagenome / Metatranscriptome | 224 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0187792_12346941 | F020300 | N/A | SVIAFMPMNTDGMWLIPTFSIMAGNDLTPTVAGIPGVTALTKGQLGYTSGSMGDLVRTLADVRFGFLDHGHWSINSATGLSWNRDRMTDGGESKLVGFGTTWRFWYDRTYGANIGVNQRLKYDFTDASGVVHKIPSDVGYNVLLVYRMAMNFAWEFGFSNVQTLRLDQNWRNGWNWNLQWHFLY |
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