Scaffold Ga0184647_1200398

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0184647_1200398

Scaffold Ga0184647_1200398

Overview

Basic Information
Taxon OID	3300019263 Open in IMG/M
Scaffold ID	Ga0184647_1200398 Open in IMG/M
Source Dataset Name	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5 (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1255
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location Name	USA: East River, Colorado
Coordinates	Lat. (^o)	38.9195	Long. (^o)	-106.9496	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F019529	Metagenome / Metatranscriptome	229	Y
F095862	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0184647_12003981	F019529	N/A	TTLLMLLFVTAASPVLADPHRANRAEPAVTCETVRAYVSQVGLVAAKAIARANGMTPGQERRARQCLASRD
Ga0184647_12003982	F095862	AGGAG	MSMSKADEFRQSTAEFWSKMDQKVGSGAARRKLTPARSGKTAAGSMPRARAAATAPKTKKRGKH

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