Scaffold Ga0180115_1368867

Overview

Basic Information

• Taxon OID: 3300019257
• Scaffold ID: Ga0180115_1368867
• Source Dataset Name: Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT660_16_1Ra (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2091
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9233
  • Long. (^o): -106.9516
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016640	Metagenome / Metatranscriptome	245	Y
F021438	Metagenome / Metatranscriptome	219	Y
F055478	Metagenome / Metatranscriptome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0180115_13688671	F021438	N/A	PTQLRLTQDLLERADALIEVMAADPEVRALGMPTRTAVLRLAIARGLRDLEGQYQRPTPANTPTVRPPTMPQDTTPPSHDGTPFHGYAERDGEDQASASHRDW
Ga0180115_13688672	F055478	GGAGG	MHPIVARWGIRGMDDFTVEELARLQQKLAGWIQQRAPQAKRTRRRPWVMQPKTAHQA
Ga0180115_13688673	F016640	AGGAG	MISIMIIVVVMGCAGWMAWNRWSFWRTPIGPPPSAEISPQTLAFEAFTHGNTCLAAGQLADATAAFEQARALDPKRPYVSERLAEVARRQHVASAPVPVAAGG