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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300019247 Open in IMG/M |
| Scaffold ID | Ga0179937_1034131 Open in IMG/M |
| Source Dataset Name | Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Illinois, USA ? AD_UKC028_MetaT (Metagenome Metatranscriptome) |
| Source Dataset Category | Metatranscriptome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1627 |
| Total Scaffold Genes | 3 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin035 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Illinois | |||||||
| Coordinates | Lat. (o) | 40.3 | Long. (o) | -88.15 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F013091 | Metagenome / Metatranscriptome | 274 | Y |
| F031881 | Metagenome / Metatranscriptome | 181 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0179937_10341311 | F013091 | AGGAGG | MSCKLTNGINLKDCDTPGGVSESYFINIEDVDTLTVTDFQVSAMTLKSTAKAYKIAFEPQTSNFASNAVGSVENSSAAFEQACEIKINKIDNNVLKQIDALTKGRHLVIIKKADGTYEMYFHEGGAKFLANYTTGTAFEDPSGVTLTATHRQPSNMLLVSATVMASLSIAEET |
| Ga0179937_10341312 | F031881 | N/A | MKNFEFKINKKITPIRTGENKFKFAIDNSGITNINITQDKIEDVIYSIFDDSEYMDVVKVITNVKGKQKIPKIFLQGAQYSGNGLIPSAGCGFVDTTDLVLNDVDIEVEKLRMGMELCLDDLVNYSFEVHITDGARNEDLDISDALLAYFTQVLRANIQDYLFNDSTNGIIPKLDTGASAATVTAASELGKLLDIYNSLPEGWQNSTKANPIIFISPNLLTSIRGEIFSATAPITSSIEIINNRFKLPLTNASVITLPFLTGTKAYAGISNYLFAGTDLESDFENVRVWYSDDNETIRFSALLYLGSAIADIGDFVKYEPLLIP |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |