Scaffold Ga0172287_1209055

Overview

Basic Information

• Taxon OID: 3300019246
• Scaffold ID: Ga0172287_1209055
• Source Dataset Name: Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Plant_deep_8_15_core_2 metaT (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 825
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland → Wetland Microbial Communities From Old Woman Creek Reserve In Ohio, Usa

Source Dataset Sampling Location

• Location Name: USA: Ohio
• Coordinates
  • Lat. (^o): 41.3778
  • Long. (^o): -82.5111
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043157	Metagenome / Metatranscriptome	157	Y
F067247	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0172287_12090552	F043157	GGAG	VVGDRLMGILDERFRECICLNIYDRIDSMQMLRELVMIKRVKSLERRIR
Ga0172287_12090553	F067247	AGGAGG	VRKLLSIGIVLALLVTFVVPVVVAAQDECCEWTPPDAAPIPDRTTKTLAGGVMWTLLGVSDIMGQAVCATTGMMAANMGGWSDELGVIGVEITAAALEGVAGLLEAVIGQFLPDFADLGASVGDLLRLIADTLAGAAE