Scaffold Ga0181510_1057893

Overview

Basic Information

• Taxon OID: 3300019240
• Scaffold ID: Ga0181510_1057893
• Source Dataset Name: Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaT (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1114
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 47.1149
  • Long. (^o): -88.5476
  • Depth (m): .1 to .2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001528	Metagenome / Metatranscriptome	677	Y
F004392	Metagenome / Metatranscriptome	440	N
F037974	Metagenome / Metatranscriptome	167	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181510_10578931	F037974	AGGAG	MPNMNHATDILRVKQIAIDEDGNVTKRFPRIDAEGQLKNTLLFAIHPEICVLSMQVPGGLLDAYEQ
Ga0181510_10578932	F001528	AGGAG	MSEKNQIVVVLIVALFLGAFVDRITALKIVAGVVLLWTLQNQPAVFECTRKLFSFVQRRPSVREYHGGVTTVRAS
Ga0181510_10578933	F004392	N/A	AMPVNGPETIADSKTSQPVPSEGRSVRAARNAKPAVGRGASARRRRDRQDSPETNGEERFFLASANRNGDVPTLGRECATEAEAIIEAFREEVHLYRVTEFQTRADIGRSGEPILRKETLKKNNPAS