Scaffold Ga0180030_1161832

Overview

Basic Information

• Taxon OID: 3300019239
• Scaffold ID: Ga0180030_1161832
• Source Dataset Name: Anaerobic biogas reactor microbial communites from Seattle, Washington, USA - Biogas_R2-A RNA time zero (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2090
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanolinea → unclassified Methanolinea → Methanolinea sp. SDB (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Anaerobic Biogas Reactor → Anaerobic Biogas Reactor Microbial Communites From Washington, Usa

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 47.6525
  • Long. (^o): -122.3049

Associated Families

Family	Category	Number of Sequences	3D Structure?
F103328	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0180030_11618325	F103328	AGG	MFRKEDGAIDMVSLILTVVIAAVTMMVGLVVVANMESSMPDISGSALSTSLTSVMENTGTAFNFLALGLFVLAAVFIIGIVAGVLGGGQG
Ga0180030_11618326	F103328	N/A	VSLILTVVIAAVTMMVGLVVVANMESSMPDISGSALSTSLTNVMENTGTAFNFLALGLFVLAAVFIIGIVAGVLGGGQ