Scaffold Ga0179952_1021155

Overview

Basic Information

• Taxon OID: 3300019235
• Scaffold ID: Ga0179952_1021155
• Source Dataset Name: Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan ? AD_JPNMR1_MetaT (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1058
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: Japan: Gunma Prefecture
• Coordinates
  • Lat. (^o): 36.29
  • Long. (^o): 139.38
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014634	Metagenome / Metatranscriptome	261	Y
F022612	Metagenome / Metatranscriptome	213	Y
F103107	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0179952_10211552	F014634	AGGAGG	MVKEKIEEIFDLERIREYAETNIDLTEWIEEEYGETRKILLIATLVEGAYGAYIPGMVLELFGEADEFDLEDPYNFEKNEAIYDALMSLETEVNKCLNELLPSKGWYYMGYHEADGSYCLFYEECEEEE
Ga0179952_10211553	F022612	AGGAGG	MRDVTIGKYKRVRKDVARRLFDQGRIIYLTPSKIVATDSSPWIKPYPIDNQAGYDFDSIVNNFEFYNCCWELGYYTNFWIKEEEAW
Ga0179952_10211554	F103107	N/A	GELAMKYQIVYWYDEKTGGYIELAGTGWDGDLSEEELLARALEEAEEVGLDLSYGKILIEEEIEE