Scaffold Ga0179934_1072955

Overview

Basic Information

• Taxon OID: 3300019226
• Scaffold ID: Ga0179934_1072955
• Source Dataset Name: Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Illinois, USA ? AD_UKC055_MetaT (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2030
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Desantisbacteria → Candidatus Desantisbacteria bacterium CG07_land_8_20_14_0_80_39_15 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Illinois
• Coordinates
  • Lat. (^o): 41.53
  • Long. (^o): -90.43
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F093490	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0179934_10729554	F093490	AGGAG	MKTFIAFSIIFLTATMAFATPFLVSDPQSGVTSYQITGWSETNVTAQADGSLRMDVGSAVQGTTYNLTVAACNIWGCSTTVPFVLQKQLPSAPSQLRLVP