Scaffold Ga0179941_1144711

Overview

Basic Information

• Taxon OID: 3300019221
• Scaffold ID: Ga0179941_1144711
• Source Dataset Name: Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Illinois, USA ? AD_UKC048_MetaT (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4162
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Leucobacter → unclassified Leucobacter → Leucobacter sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Illinois
• Coordinates
  • Lat. (^o): 41.12
  • Long. (^o): -87.64
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020914	Metagenome / Metatranscriptome	221	N
F067770	Metagenome / Metatranscriptome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0179941_11447112	F020914	AGAAGG	MAIYQKYGFAIDQILSEDQALPTYAQPGDSTNTIKLDAVADDGLHIVVCAASTTVELASGATLEIRPTVGLTANAVTTVLPSILITQGVQSDVSWASGEMICQFNIPAKLIGSARYLKLTYVTSANESDDKVEAFSVRR
Ga0179941_11447114	F067770	GAG	MIEFKYNSPIFKLGKISRSEWRELGMSARSEIVKRTRSGIDINHQPFHEYSAMTKEYKSGIMQTRGLGSSVVTLQDTGQMHRSLSIEVQANAAILYYADQNRARVALLHQTGGFHLPKREHFGFNKTDGNKYLEKIAKLQTVKNKKANR