NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187799_1144688

Scaffold Ga0187799_1144688


Overview

Basic Information
Taxon OID3300019211 Open in IMG/M
Scaffold IDGa0187799_1144688 Open in IMG/M
Source Dataset NameMetatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_10_MT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)868
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NameColombia: Department of Meta
CoordinatesLat. (o)4.2396Long. (o)-73.2024Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002367Metagenome / Metatranscriptome566Y
F018334Metagenome / Metatranscriptome235Y

Sequences

Protein IDFamilyRBSSequence
Ga0187799_11446881F018334AGGVQLVALKVPVELLVKVTVPVGVIAPVPEESATVTLHESATLSRTLAVQDTVVVVDRIVEASVKVPLLPV
Ga0187799_11446883F002367AGGVQLVALKVPVLLLVNVTIPVGVTAPVPEESATVTVHVDATLSRTLAGEQDTEVVLDLMVEASVNVPVLPVWTESPP

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