NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0180036_1049047

Scaffold Ga0180036_1049047


Overview

Basic Information
Taxon OID3300019200 Open in IMG/M
Scaffold IDGa0180036_1049047 Open in IMG/M
Source Dataset NameEstuarine microbial communities from the Columbia River estuary - R.1175 metaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1497
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)46.235Long. (o)-123.91Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F077986Metagenome / Metatranscriptome117Y
F105059Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0180036_10490474F077986N/AMKEGTLVWIVASVEDDALQVNCDNDEIVVEPHGFRAMPLYADKQWVKPLTEEEIQEYNRN
Ga0180036_10490475F105059N/AMKISVEYWDYTCGDGCCYDWGYDVFVDGEKIGQINDTPEELADLLNEYFNSKEK

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