Scaffold Ga0187789_1201686

Overview

Basic Information

• Taxon OID: 3300019199
• Scaffold ID: Ga0187789_1201686
• Source Dataset Name: Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MT (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 561
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location

• Location Name: Colombia: Department of Meta
• Coordinates
  • Lat. (^o): 3.8381
  • Long. (^o): -73.3194
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000734	Metagenome / Metatranscriptome	915	Y
F004925	Metagenome / Metatranscriptome	418	Y
F026580	Metagenome / Metatranscriptome	197	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187789_12016861	F000734	AGGA	VKTFRNAGDVKNGTAGLRTKGNLRVKRRDPWHRANVPSKAGADPA
Ga0187789_12016862	F026580	GGCGG	MRNRFEPDQVTQAGFGLERIAVTQRVSGCYCASARTDDSGGPRKGVSQTKDAERRDKVSVRPGKDTRSRQDP
Ga0187789_12016863	F004925	N/A	LRRVVAINRSVLNVSRILPDDWGKAESGWLAWPLLSRTARFGGGGRIHQFLWRRSRAVSNANQEPGGEER