NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0184584_131442

Scaffold Ga0184584_131442


Overview

Basic Information
Taxon OID3300019187 Open in IMG/M
Scaffold IDGa0184584_131442 Open in IMG/M
Source Dataset NameSoil microbial communities from Bohemian Forest, Czech Republic ? CSU2 metaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)556
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameCzech Republic: South Bohemian Region
CoordinatesLat. (o)49.044Long. (o)13.617Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036577Metagenome / Metatranscriptome169Y
F100551Metagenome / Metatranscriptome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0184584_1314421F036577N/AMPGKPLMLSPFSIRRFGAARVDTIPLLDRTSHRPAVRRMSLPMSLE
Ga0184584_1314422F100551N/ALRAFQFVPLDLSTANRRLTLRFELNFSHAVQQVTGLFHLPLASRPQPKPLAVCLVPMDRPVSCRAFHFASSVCRTFTLRR

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