Scaffold Ga0184598_122164

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0184598_122164

Scaffold Ga0184598_122164

Overview

Basic Information
Taxon OID	3300019182 Open in IMG/M
Scaffold ID	Ga0184598_122164 Open in IMG/M
Source Dataset Name	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZE1 metaT (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1541
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location Name	Czech Republic: South Bohemian Region
Coordinates	Lat. (^o)	49.043	Long. (^o)	13.6183	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002101	Metagenome / Metatranscriptome	593	Y
F004095	Metagenome / Metatranscriptome	453	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0184598_1221641	F004095	AGGCGG	MSGINGDKARFNRRRRQKISRRQSNEKMLKALAEKNLVAPAKAANLKEKVA
Ga0184598_1221642	F002101	AGGAG	MTTSVIALPLSTPEVSPAKKKRVLLLDASQTKRDLRADVMRQLGIEVDCAADVLEARCWWRADLYNLVLISVAGEIDSRDKFCTDIRSANPPQRIAFFVGGPEYLAAVPHSDGAPVEAGALDKELVAALLAQGSHNSPQQRWGILEACRKISSVRSVSEARSRAIRETPRPSRWAEAIEQHSAPEIIQPQALFTTAPAAVPAATEREELL

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