NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0184594_130016

Scaffold Ga0184594_130016


Overview

Basic Information
Taxon OID3300019181 Open in IMG/M
Scaffold IDGa0184594_130016 Open in IMG/M
Source Dataset NameSpruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZI3 metaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2149
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → Narnavirus → unclassified Narnavirus → Plasmopara viticola lesion associated narnavirus 22(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameCzech Republic: South Bohemian Region
CoordinatesLat. (o)49.0431Long. (o)13.617Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030619Metagenome / Metatranscriptome184Y

Sequences

Protein IDFamilyRBSSequence
Ga0184594_1300161F030619GGAGGMSPLQQVWTACWSGLVLSGWDSMRVAWFLHQWTCRSAPRGVAYQVDCLKKLCHNVRGYALHSKRFKLQPCGIRKDVVDCLCNLAVRAPENGFAFSRLSRSLPEPPQRECVRHLQAAAEMASTSFPTSAAALASLRSFVSLSKRARRNPRAPRRLPSSSSSCLEWPATLGGIDGYLEHLGHGLEARGATQAEFLHLAGDSLGAFCLNRARVFLRPCQGVSEDFRESYRCAGLLALRAEGKPFAMKAAALRTPGYKVRVVGVPDARTFVEGSWIRESSRLMAPGHWAIDSESREIPNGLHYRRGHTFRSLDLSKATDGLSHAAVGVVIEALARRGAIRPADHLMARRSLGLVGNTTWSFPDPIGEVVFSRGSPMGTPLSFVVLSWVNAWAVSKFSRSLTHGDDAVGRHRIGSDALHIYSDRVESVGAQLNRTKTFRADHSWTACEILALPRRHCEDGMSLFVPPSIPPPDLRAPVEADPRLENLWLRRMERVMKTRFPWVKCDPRLHLPVEVGGLGFTGRGLAVGRSLRSRLGALVSRGPSAEIGAALIGKKPFREVGLFPRPLVRVPKPKAYWSAVKTVDRELVPLGTDLVTVPLESFETFKCQLVESELRLIEGEKFRRKRVAGRPDRTKGSTVFRRLTVTPAKPLTRRGGVASLKRWALACKKARVTVDQDIASEI
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.