NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0184596_103108

Scaffold Ga0184596_103108


Overview

Basic Information
Taxon OID3300019176 Open in IMG/M
Scaffold IDGa0184596_103108 Open in IMG/M
Source Dataset NameSpruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZU2 metaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)605
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameCzech Republic: South Bohemian Region
CoordinatesLat. (o)49.044Long. (o)13.617Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003143Metagenome / Metatranscriptome505Y
F011682Metagenome / Metatranscriptome288Y

Sequences

Protein IDFamilyRBSSequence
Ga0184596_1031082F003143AGGAVEAVIGFAVGYWVGTRQGRQGLQKALDSAQAIWASPETKRLLSEGLSAFETVAAPAMDRLGGKSSRRSALISTVVDELIERRQSRRAA
Ga0184596_1031083F011682N/AKEVREMLSRLIKAVVIAAVLALVIDSLPDIKRYLEIREM

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