NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0184580_109870

Scaffold Ga0184580_109870


Overview

Basic Information
Taxon OID3300019158 Open in IMG/M
Scaffold IDGa0184580_109870 Open in IMG/M
Source Dataset NameSoil microbial communities from Bohemian Forest, Czech Republic ? CSI1 metaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1647
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameCzech Republic: South Bohemian Region
CoordinatesLat. (o)49.043Long. (o)13.6183Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002337Metagenome / Metatranscriptome569Y
F008209Metagenome / Metatranscriptome337Y

Sequences

Protein IDFamilyRBSSequence
Ga0184580_1098701F002337GGAGMNLAIVLVIAAVLALSLILRLAVTQSLQAKRSANLAGTIRPIDIEAFRNLINPAEDDYLRCRLPPAQFRLVRRERLRAMATYIHVAARNAAMLMRVGEAALATGDPRVAEAAHQLVNDALLLRRNTTVALARIYLALAWPNSGIAAVRVVDRYEQVSGSAMLLGRLQNPAVPVRISSLR
Ga0184580_1098704F008209N/AKTTVKRMLLVVAAAVLFLNTLVVPTVARADGGPLGGTCSGQTACKP
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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