NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0184568_113222

Scaffold Ga0184568_113222


Overview

Basic Information
Taxon OID3300019155 Open in IMG/M
Scaffold IDGa0184568_113222 Open in IMG/M
Source Dataset NameSpruce litter microbial communities from Bohemian Forest, Czech Republic ? CLI1 metaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)843
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameCzech Republic: South Bohemian Region
CoordinatesLat. (o)49.043Long. (o)13.6183Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006591Metagenome / Metatranscriptome369Y
F031504Metagenome / Metatranscriptome182Y

Sequences

Protein IDFamilyRBSSequence
Ga0184568_1132221F031504GGAGGMPRASFIRRWGLTTRGRDYQLTPAFPRLPGIIPEGPASGPPLARQPLRKPS
Ga0184568_1132222F006591N/AWALATRSFPFAGPWALAPSQVGGRLLDASSRGNAELSVSWQDRRPDCSRRLLGEAFQHGSPIPCRGSAPHMVVRLLRHSLVTAVLQVGPRELPPERWPEGTGLASYPSIDI

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