Scaffold Ga0192888_10003434

Overview

Basic Information

• Taxon OID: 3300019151
• Scaffold ID: Ga0192888_10003434
• Source Dataset Name: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_068 - TARA_N000000705 (ERX1789682-ERR1719501)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Canada's Michael Smith Genome Sciences Centre
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3728
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: South Atlantic Ocean: TARA_068
• Coordinates
  • Lat. (^o): -31.0551
  • Long. (^o): 4.668
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F094857	Metatranscriptome	105	N
F104391	Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0192888_100034345	F104391	N/A	MKENGDQQASLGKGECPVNLDPLDPEVRMVLKGQMVNLDHLDPRDLLDTKVPLGWLVYLVSAEFQGLKVLRGEEVIQAFLDQLVLMAEQARGVNKALLVLQDPLGRLEVLEIQGRQGPSENRDQLV
Ga0192888_100034347	F094857	GGA	LADRDLLERPGCPVKRALMDQEDPQAKEDHRDLKACQAWKAVREPLVLMDLMDRLDHLDQMDLLGIEEFLVYQVLLVQLELQANKDHKEKGEILASQESKALRDHLGLLVLPGLLESEVSGVRRVHQESRELQGWAVDLVTRVHLVQQE