 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300019131 Open in IMG/M |
| Scaffold ID | Ga0193249_1000413 Open in IMG/M |
| Source Dataset Name | Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_081 - TARA_N000001424 (ERX1809759-ERR1740116) |
| Source Dataset Category | Metatranscriptome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Canada's Michael Smith Genome Sciences Centre |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3978 |
| Total Scaffold Genes | 6 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Atlantic Ocean: TARA_081 | |||||||
| Coordinates | Lat. (o) | -44.5455 | Long. (o) | -52.3242 | Alt. (m) | Depth (m) | 35 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F085090 | Metatranscriptome | 111 | N |
| F094857 | Metatranscriptome | 105 | N |
| F104391 | Metatranscriptome | 100 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0193249_10004133 | F104391 | AGCAGG | VKGECPVNLDPLDLEVRMVLKDQMVNLDHLDPRDLLDTKDPLDWLVYLVSEEFQGLKVLKGEEVIRAFLDQLVLMAEQARGVNKASLVLQDPLGRLEVLEIQGRQGLSENRDQLV |
| Ga0193249_10004134 | F094857 | GGAG | VKLDQEECLEIWDHLVDLENLECLVKLADRALLERPGCPVKRAQMDQEDPQAKEDHRDLKACQAWKAVREPLVLMDQMDRLDHLDLMDLLGIEEFLVYQALLAQLEPQANKEHKEKGEILASQESKALRDHLGLLVLPGLLESEVRGVRRVHQESRELQGWAVDLVTRVRLVQRE |
| Ga0193249_10004135 | F085090 | GGAG | VHLDFLDLQARLDHRDLLEREESVVCQDLLGWLAILDQLASLDHLVYRAALERLDHRDNLDPRATAVSLAFRVFLDPLDLKDRRDLQAKMERTESQVQWAGAVLQDLMAPLVVWATLVPQDQEDHQARKAREVHLASLVLLGLLAHQARAMEWTWLP |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |