Scaffold Ga0188839_1027700

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0188839_1027700

Scaffold Ga0188839_1027700

Overview

Basic Information
Taxon OID	3300019122 Open in IMG/M
Scaffold ID	Ga0188839_1027700 Open in IMG/M
Source Dataset Name	Metatranscriptome of marine microbial communities from Baltic Sea - GS677_0p1
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	J. Craig Venter Institute (JCVI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	566
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Metatranscriptome Of Marine Microbial Communities From Baltic Sea

Source Dataset Sampling Location
Location Name	Baltic Sea
Coordinates	Lat. (^o)	58.581234	Long. (^o)	18.232801	Alt. (m)		Depth (m)	9
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F034185	Metagenome / Metatranscriptome	175	Y
F056618	Metagenome / Metatranscriptome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0188839_10277002	F056618	N/A	MTIEKQPYRITIEQYEYKYSVEVDHSDISFTDYVELLRQITLAAGWGIDAVEEFFDE
Ga0188839_10277003	F034185	GAG	MSHDLLSYKEARIEALLNRIEELELKNEKLTTYVFELCDKDCPEDYKRVVKG

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