Scaffold Ga0188839_1012888

Overview

Basic Information

• Taxon OID: 3300019122
• Scaffold ID: Ga0188839_1012888
• Source Dataset Name: Metatranscriptome of marine microbial communities from Baltic Sea - GS677_0p1
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 939
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Metatranscriptome Of Marine Microbial Communities From Baltic Sea

Source Dataset Sampling Location

• Location Name: Baltic Sea
• Coordinates
  • Lat. (^o): 58.581234
  • Long. (^o): 18.232801
  • Depth (m): 9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014130	Metagenome / Metatranscriptome	265	N
F048167	Metagenome / Metatranscriptome	148	N
F057991	Metagenome / Metatranscriptome	135	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0188839_10128882	F057991	N/A	MSIESVNIERILDSIKDLKQYEYQVVINYNQYHYITNTMRSCGKDEPEALEALKQKLSKKMDKLKDKRGEYKVESIKLI
Ga0188839_10128883	F014130	N/A	MNAMEKRYTFEVILNLDNKYYTTNLMAGYGSNPENAMDNLKSKLNNQFMMLKEDNYNFTIGSIKHITP
Ga0188839_10128884	F048167	N/A	MTTQQAKETLNKPFICKEAERSIREMKIRLSKYTGDKSEQTKHLSNLDNLLNLAHKQA