NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0188839_1008566

Scaffold Ga0188839_1008566


Overview

Basic Information
Taxon OID3300019122 Open in IMG/M
Scaffold IDGa0188839_1008566 Open in IMG/M
Source Dataset NameMetatranscriptome of marine microbial communities from Baltic Sea - GS677_0p1
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1245
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Metatranscriptome Of Marine Microbial Communities From Baltic Sea

Source Dataset Sampling Location
Location NameBaltic Sea
CoordinatesLat. (o)58.581234Long. (o)18.232801Alt. (m)Depth (m)9
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034147Metagenome / Metatranscriptome175Y
F059884Metagenome / Metatranscriptome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0188839_10085662F059884GAGMLLVGRTKIPYEQLFCLSRKELKALVKGHEIDQKDMIESMRVHAIIELQPHLKKGANISPNKIWPLPWDNIVKPLDSTPQDFAKAKKLLEIASKLERNGKSKNRR
Ga0188839_10085663F034147N/AMAKYHSAPYKEGEIFFYPNLGALANFEDFTGQGIAQSFSGNGIPKLDDIYGLLHECHKVACLRKSTNQVSLDELKVWIEGKDVMKLFSEILADLLLELGLGDNQEKKT
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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