Scaffold Ga0193256_1009273

Overview

Basic Information

• Taxon OID: 3300019120
• Scaffold ID: Ga0193256_1009273
• Source Dataset Name: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_092 - TARA_N000001303 (ERX1789686-ERR1719360)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Canada's Michael Smith Genome Sciences Centre
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1413
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → malvids → Malvales → Malvaceae → Sterculioideae → Pterygota (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Pacific Ocean: TARA_092
• Coordinates
  • Lat. (^o): -33.6771
  • Long. (^o): -71.9719
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F073052	Metatranscriptome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0193256_10092733	F073052	GGCGG	VDKHVLLGVVPVDESVSRLDIEPLDCSADFGGDHFLGFLLLHLLPSLLLVGLDLRVCHDV