Scaffold Ga0188859_1000698

Overview

Basic Information

• Taxon OID: 3300019098
• Scaffold ID: Ga0188859_1000698
• Source Dataset Name: Metatranscriptome of marine microbial communities from Baltic Sea - GS684_0p1
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1473
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Metatranscriptome Of Marine Microbial Communities From Baltic Sea

Source Dataset Sampling Location

• Location Name: Baltic Sea
• Coordinates
  • Lat. (^o): 54.570232
  • Long. (^o): 11.332183
  • Depth (m): 15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010318	Metagenome / Metatranscriptome	305	Y
F032867	Metagenome / Metatranscriptome	179	Y
F052274	Metagenome / Metatranscriptome	143	N
F098031	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0188859_10006982	F032867	AGGAG	MDDMTQMIDDLIDNHYRVQHLIGTEADESEYLADISEEDDDV
Ga0188859_10006985	F098031	GGAGG	MKYSVELHVIQIHDVEVEATSYEDARNKAIKEWRNGYIYNDVGSPTFCKEEAKVVSFTSMPTAEEILNRKVYR
Ga0188859_10006987	F010318	AGGAGG	MNVDSDKPRYIECIYEAFITFDLEELGIDWDNVKDYYIKYGTLYVEFKDGSSEEHEGNQGETDWKWSAQENILTEDWTLVEGLN
Ga0188859_10006988	F052274	GGAGG	MNRTLYKKLEDICAREYIINKLSANKFRTFVDFLYDDIRTWDKPMNVSEVDIIHRIEEHMSY