Basic Information | |
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Taxon OID | 3300019093 Open in IMG/M |
Scaffold ID | Ga0187843_10169235 Open in IMG/M |
Source Dataset Name | Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - SP09_SKY_43 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 939 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 46.008 | Long. (o) | -89.701 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F003378 | Metagenome / Metatranscriptome | 490 | Y |
F020354 | Metagenome | 224 | Y |
F031461 | Metagenome | 182 | N |
Protein ID | Family | RBS | Sequence |
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Ga0187843_101692351 | F003378 | GGTGG | VKIKQNQTIAKFLDLTQRLFSLFLANALPAVTTGAVIGISVAKSAIMAGAMAVIAVVQKLATASVDGELTSEEIKEAFSGAKKK |
Ga0187843_101692352 | F020354 | GAG | MIRKLKDELFALGFTLGASAITIMTLSGTVQNWALLFTFLSLALHLAGVLTKDGENDGGRSED |
Ga0187843_101692353 | F031461 | N/A | EIIPNQPISNVKVEQMVQALTEQPPAQILSAIQQVLTADITSDQAVSIASSPEVLAAVTEEQAEAIFEEIVVEELTAELAEELVAVLNEAPSKVKKKFQETINVFAGVFDSYKMVGSTIPVGERRTLLAVSNTLVAVGASLRRRDR |
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