Basic Information | |
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Taxon OID | 3300019093 Open in IMG/M |
Scaffold ID | Ga0187843_10155491 Open in IMG/M |
Source Dataset Name | Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - SP09_SKY_43 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 991 |
Total Scaffold Genes | 2 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 46.008 | Long. (o) | -89.701 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F002009 | Metagenome / Metatranscriptome | 604 | Y |
F010983 | Metagenome / Metatranscriptome | 296 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0187843_101554911 | F002009 | AGGAG | MTAPSIAEMGDAAGEIIWRVMGKGSDKSAYGDWLEKDRPTHDYHIARAVRHLATAQMQLHKSTPCPDNNGETSVDHLERALVRTLFVLAQIKK |
Ga0187843_101554912 | F010983 | N/A | SVTSVLGIMDKPQLTAWKIEQAIMSSLTLPKEEDETLETYARRVVKDSKESTTKAAEHGTKMHTEMENILLGRAVSRDETLAPYIKTFSEWAEKNIEKTYWCEKGLVGAGYAGRCDAYVKLRGIGDAIIDLKNRKVNPRYEPFYDTDCAQIFAYLSASENPKAAGVSIVLASNDSSKIMTKVWDEDELYQAGIAFCAMQKVWAWVKGYTPPGMKL |
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