NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0187843_10155491

Scaffold Ga0187843_10155491


Overview

Basic Information
Taxon OID3300019093 Open in IMG/M
Scaffold IDGa0187843_10155491 Open in IMG/M
Source Dataset NameOligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - SP09_SKY_43
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)991
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)46.008Long. (o)-89.701Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002009Metagenome / Metatranscriptome604Y
F010983Metagenome / Metatranscriptome296Y

Sequences

Protein IDFamilyRBSSequence
Ga0187843_101554911F002009AGGAGMTAPSIAEMGDAAGEIIWRVMGKGSDKSAYGDWLEKDRPTHDYHIARAVRHLATAQMQLHKSTPCPDNNGETSVDHLERALVRTLFVLAQIKK
Ga0187843_101554912F010983N/ASVTSVLGIMDKPQLTAWKIEQAIMSSLTLPKEEDETLETYARRVVKDSKESTTKAAEHGTKMHTEMENILLGRAVSRDETLAPYIKTFSEWAEKNIEKTYWCEKGLVGAGYAGRCDAYVKLRGIGDAIIDLKNRKVNPRYEPFYDTDCAQIFAYLSASENPKAAGVSIVLASNDSSKIMTKVWDEDELYQAGIAFCAMQKVWAWVKGYTPPGMKL

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.