Scaffold Ga0187843_10114776

Overview

Basic Information

• Taxon OID: 3300019093
• Scaffold ID: Ga0187843_10114776
• Source Dataset Name: Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - SP09_SKY_43
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1196
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 46.008
  • Long. (^o): -89.701
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032141	Metagenome	180	Y
F041596	Metagenome / Metatranscriptome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187843_101147761	F032141	N/A	NIMRISTKNMQARAINVKRGPTTGNENPGTKRSDFMAEKSKTGSEKSEIANMITDAVAARGRGMMGFRDPAVEGLHTKTNVGRGPTKGNAGRQTGKSGAARRGALGATSGY
Ga0187843_101147762	F041596	AGG	MKGIEMNKITPTTDSNIWDDVPAEKPTKKPAKTVAPTAGPDEFDSNGFDTDGFVSRDFDLEGLMTDFPTARDLERFVFDETGVVLNLKGRANKLKYQVAMDVLNGAPVDPRYIGRDNPYLDKADMVPEEPMKALPARSEELPPLDQVQNQFFTAFVPHSDPDYHAQGRKMHCTFRKYKNGVISYDVIGPIEPRPYGEKIDKFGRSRPEIIKWVDPRTGEQLVQREDGTLTPVGRRLKAMMQNLRYNTSNQWVNYVDREFVSLDHRAAAN