NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187843_10112130

Scaffold Ga0187843_10112130


Overview

Basic Information
Taxon OID3300019093 Open in IMG/M
Scaffold IDGa0187843_10112130 Open in IMG/M
Source Dataset NameOligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - SP09_SKY_43
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1214
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)46.008Long. (o)-89.701Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022415Metagenome / Metatranscriptome214Y
F045555Metagenome / Metatranscriptome152Y
F046380Metagenome / Metatranscriptome151N

Sequences

Protein IDFamilyRBSSequence
Ga0187843_101121301F045555AGGAMNSIFIVRAEDRGAPESIIYGVYPTAKLAEARCAVLEDPNHSYCHDFVWFDEVLAVGPMGADCEFANR
Ga0187843_101121303F022415AGGAGMSRMSELHMLIVEAIESGVTDEWTIELMVEEGLPRDACPEILRVFKEVESV
Ga0187843_101121304F046380GGAGMNWKTLGSAYETMTQAEALEIVQQEATDLGLPMLETLMYMQDNYEELDSVQKNAFRTAFRGFQRLLAPA

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